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芝麻AP2/ERF基因家族生物信息學鑒定與分析

Bioinformatics Identification and Analysis of AP2/ERF Gene Family in Sesame

  • 摘要: AP2/ERF(APETALA2/ethylene responsive factor)是植物所特有的一類家族轉錄因子🧌🥽,在控製植物生長發育、參與次級代謝以及抵抗非生物脅迫等方面起重要作用🥣。根據已報道的擬南芥AP2/ERF基因🧛🏽,利用生物信息學手段在最新發布的芝麻(Sesamum indicum L.)參考序列共鑒定出142個AP2/ERF基因,並對其理化性質、系統進化、結構域🤱🏽◼️、保守基序🥽、染色體定位、物種共線性、不同組織的表達特異性以及基因表達對脅迫響應等信息進行分析🆓🦌。根據理化性質分析👎🏿,將芝麻AP2/ERF基因家族成員編碼為121~697個氨基酸🤩,其編碼蛋白相對分子量介於13428.04~76020.09 kD之間,理論等電點介於4.50~10.24之間🤹🏼。根據結構域和系統進化分析🤑,將芝麻AP2/ERF蛋白分為4個亞家族👄,其中AP2包含26個成員💆‍♂️、ERF包含116個成員🤾🏼‍♀️、Soloist包含2個成員以及RAV包含3個成員🤜🏻。其中136個成員不均勻分布於16條染色體上,且集中成簇分布於第1~4和6~12染色體同源群🕵🏿‍♀️。根據共線性分析,在芝麻染色體上分別有32、49個與大麥、玉米具有共線性的AP2/ERF基因。在演化過程中👩🏻‍🦲,芝麻與玉米之間的保守性高於大麥,而與大麥之間的變異性高於玉米🤵🏽。Ⅶ亞組中LOC105157874基因在2個芝麻品種中均上調,可能參與了芝麻響應淹水脅迫調控。為進一步研究芝麻AP2/ERF轉錄因子家族生物學功能及芝麻抗逆改良提供科學依據👶🏻。

     

    Abstract: AP2/ERF (APETALA2/ethylene responsive factor) is one of families of transcription factors unique to plants, which plays an important role in controlling plant growth and development, participating in secondary metabolism and resisting abiotic stress. Based on the reported AP2/ERF genes in Arabidopsis thaliana, 142 AP2/ERF genes were identified in the newly published sesame (Sesamum indicum L.) reference sequences by bioinformatics. The physicochemical properties, phylogeny, domains, conserved motifs, chromosome localization, species collinearity, expression specificity in different tissues and gene expression response to stress were analyzed. According to the analysis of physicochemical properties, the AP2/ERF gene family of sesame encodes 121-697 amino acids, the relative molecular weight of the protein is 13428.04-76020.09 KD, and the theoretical isoelectric point is between 4.50 and 10.24. According to the analysis of domain and phylogenetic analysis, the AP2/ERF protein in sesame can be divided into four subfamilies: AP2 contains 26 members, ERF contains 116 members, soloist contains 2 members and Rav contains 3 members. 136 members are unevenly distributed on 16 chromosomes, and are clustered in homologous groups of chromosomes 1-4 and 6-12. According to the collinearity analysis, there are 32 and 49 AP2/ERF genes on Sesame chromosome, which are collinear with barley and maize respectively. In the evolution process, the conservation of AP2/ERF gene with maize is higher than that with barley, and the variability with barley is higher than that with maize. The LOC105157874 gene in subgroup VII was up-regulated in both sesame varieties, which may be involved in the regulation of sesame response to flooding stress and needs further experimental verification.This study provides a scientific basis for further study on the biological function of AP2/ERF transcription factor family and the improvement of sesame stress resistance.

     

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